Plant gene regulatory networks : methods and protocols
- edited by Kerstin Kaufmann, Bernd Mueller-Roeber.
- New York : : Humana Press, 
- Physical description
- xi, 350 pages : illustrations (some color) ; 26 cm.
- Methods in molecular biology (Clifton, N.J.) ; v. 1629.
Science Library (Li and Ma)
|QH506 .M45 V.1629||Unknown|
- Includes bibliographical references and index.
- From genes to networks : characterizing gene-regulatory interactions in plants / Kerstin Kaufmann and Dijun Chen
- Inducible promoter systems for gene perturbation experiments in Arabidopsis / Bennett Thomson, Emmanuelle Graciet, and Frank Wellmer
- Cell type-specific gene expression profiling using fluorescence-activated nuclear sorting / Daniel Slane and Martin Bayer
- Characterization of cell-type-specific DNA binding sites of plant transcription factors using chromatin immunoprecipitation / On Sun Lau
- Yeast one- and two-hybrid high-throughput screenings using arrayed libraries / Rocío Sánchez-Montesino and Luis Oñate-Sánchez
- SELEX-seq : a method to determine DNA binding specificities of plant transcription factors / Cezary Smaczniak, Gerco C. Angenent, and Kerstin Kaufmann
- Analysis of a plant transcriptional regulatory network using transient expression Systems / Sara Díaz-Triviño, Yuchen Long, Ben Scheres, and Ikram Blilou
- Analysis of in vivo chromatin and protein interactions of Arabidopsis transcript elongation factors / Alexander Pfab, Wojciech Antosz, Philipp Holzinger, Astrid Bruckmann, Joachim Griesenbeck, and Klaus D. Grasser
- Characterization of mediator complex and its associated proteins from rice / Subhasis Samanta and Jitendra Kumar Thakur
- DNase I SIM : a simplified in-nucleus method for DNase I hypersensitive site sequencing / Sergei A. Filichkin and Molly Megraw
- In situ Hi-C library preparation for plants to study their three-dimensional chromatin interactions on a genome-wide scale / Chang Liu
- Multiplexed transcriptional activation or repression in plants using CRISPR-dCas9-based systems / Levi G. Lowder, Joseph W. Paul III, and Yiping Qi
- Generation of dTALEs and libraries of synthetic TALE-activated promoters for engineering of gene regulatory networks in plants / Tom Schreiber and Alain Tissier
- Design of knowledge bases for plant gene regulatory networks / Eric Mukundi, Fabio Gomez-Cano, Wilberforce Zachary Ouma, and Erich Grotewold
- AraNet : a network biology server for Arabidopsis thaliana and other non-model plant species / Tak Lee and Insuk Lee
- Integration of genome-wide TF binding and gene expression data to characterize gene regulatory networks in plant development / Dijun Chen and Kerstin Kaufmann
- Predicting transcription factor binding sites and their cognate transcription factors using gene expression data / Chun-Ping Yu and Wen-Hsiung Li
- Computational approaches to study gene regulatory networks / Nooshin Omranian and Zoran Nikoloski
- Boolean dynamic modeling approaches to study plant gene regulatory networks : integration, validation, and prediction / José Dávila Velderraín, Juan Carlos Martínez-García, and Elena R. Álvarez-Buylla
- ODE-based modeling of complex regulatory circuits / Daniel D. Seaton
- Inferring gene regulatory networks in the Arabidopsis root using a dynamic Bayesian network approach / Maria Angels de Luis Balaguer and Rosangela Sozzani.
- Publisher's Summary
- This volume presents protocols that analyze and explore gene regulatory networks (GRNs) at different levels in plants. This book is divided into two parts: Part I introduces different experimental techniques used to study genes and their regulatory interactions in plants. Part II highlights different computational approaches used for the integration of experimental data and bioinformatics-based predictions of regulatory interactions. This part of the book also provides information on essential database resources that grant access to gene-regulatory and molecular interactions in different plant genomes, with a specific focus on Arabidopsis thaliana. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.Thorough and cutting-edge, Plant Gene Regulatory Networks: Methods and Protocols is a valuable resource for scientists and researchers interested in expanding their knowledge of GRNs.
(source: Nielsen Book Data)9781493971244 20170821
- Gene regulatory networks.
- Publication date
- Methods in molecular biology, 1064-3745 ; 1629
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