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SOLID phase extraction, PULMONARY surfactant, ANALYTICAL chemistry, SURFACE active agents, PREMATURE infants, and DENSITY functional theory

• A mixed mode DSPE approach was developed using organic polymers. • The method was used to lung surfactants determination in EBC samples. • Density functional theory calculations were used to show the nature of the chemical interactions. • Simplex centroid experimental design was used for optimization of the sorbent composition. A mixed mode dispersive solid phase extraction method was introduced for the extraction of three lung surfactants from exhaled breath condensate samples. Considering the trends to green analytical chemistry, organic polymers including polystyrene (PS), polymethylmethacrylate (PMMA-15 K), and polymethylmethacrylate (PMMA-45 K) were utilized as the sorbent for extraction of the analytes. The extraction capability for each polymer toward the studied analytes was evaluated using simplex centroid design. Based on the results, a mixture of sorbents consisting of PS, PMMA-15 K, and PMMA-45 K mixture with the mass ratio of 1:2:1: w/w/w was selected as the suitable sorbent. The effective parameters influencing the method's efficiency were investigated and optimized. Based on the figure of merit for the developed method, the calibration curves were linear in the concentration range of 0.76–1000 ng mL–1 and limits of detection were from 0.09 to 0.19 ng mL–1. The method repeatability was investigated at three concentrations as inter- and intra-day precisions and the obtained data showed that they were in the ranges of 5.2–9.1 and 4.2–8.9%, respectively. The enrichment factors were in the range of 88–100. The developed method was successfully employed in the analysis of the surfactants in the exhaled breath samples of three premature infants collected from the expiratory circuits of the mechanical ventilators. The nature of the chemical interactions with PMMA-PS complex system of the surfactants was investigated through Density Functional Theory calculations. Calculated binding energies showed that PMMA-PS complex system exhibit high performance in the extraction of lung surfactants. The most powerful interaction is between PMMA-PS complex system and 1-palmitoyl-2-oleoylsn‑glycero-3-phosphocholine. [ABSTRACT FROM AUTHOR]

Coral skeletal P/Ca ratio has been developed as an indicator of temporal seawater dissolved inorganic phosphorus (DIP). The use of coral P/Ca proxy helps to assess oceanographic and climatic impacts such as upwelling, circulation, and continent runoffs on marine biogeochemical cycles. However, factors controlling skeletal P incorporation and elemental partitioning between seawater and coral skeletons remain elusive. We conducted temperature-controlled (∼21 to 29 °C) aquaria culture experiments using two colonies of Porites australiensis corals (here refer to B and C) with the only difference in zooxanthellae density (B > C). The coral growth rate ranges from 9.4 to 19.4 mg/day (B) and 0.7 to 14.1 mg/day (C). Only the growth rate of colony C significantly correlates to temperature, potentially reflecting physiological controls on the two colonies given the difference in the zooxanthellae density. We measured coral P/Ca ratios by Inductively coupled plasma mass spectrometry and determined skeletal P speciation through a synchrotron-based spectroscopic approach. Coral P/Ca ratio ranges from 6.5 to 18.6 μmol/mol (B) and 7.2 to 19.8 μmol/mol (C). The dominance of organic-P is confirmed, and the presence of inorganic-P cannot be excluded. Only colony C has a strong P/Ca dependence on temperature and both colonies show strong correlations between P/Ca and growth rate. Although growth rate and temperature are intercorrelated, the growth rate is more likely the direct controlling factor on coral P/Ca in our experiments. Combined laboratory data with field observations, we suggest that the validity of the Porites P/Ca proxy may be influenced by seawater DIP, coral species, and growth rate. • Cultured coral P/Ca ratio can be variable with relatively constant seawater chemistry. • Organic phosphorus is widely present in coral skeletons despite oxidative cleaning. • The validity of the P/Ca proxy could be influenced by seawater DIP, coral species, and growth rate. [ABSTRACT FROM AUTHOR]

Radical Ring‐opening polymerization (RROP) of cyclic ketene acetals (CKAs) emerges to be a valuable polymerization technique. In attracting more attention, RROP has seen a new spike in publications, which the authors will put into perspective. This review will hence address the progress made on the number of available CKAs and the synthetic strategies to get them. In grouping, the available monomers into distinct categories, the enormous variety of available CKAs will be highlighted. Polymerizations of CKAs without vinylenes have the potential to yield fully biodegradable polymers, which is why this kind of polymerization is the focus of this review. Detailing the current understanding of the mechanism, the various side reactions will be noted and also their effect on the overall properties of the final polymers. Current attempts to control the ring‐retaining and branching reactions will be discussed as well. In addition to the polymerization itself, the available materials will be discussed as well as homopolymers, copolymers of CKAs, and block‐copolymers with pure CKA‐blocks have significantly widened the range of possible applications of materials from RROP. Altogether this review highlights the progress in the entire field of RROP just of CKAs to give a holistic overview of the field. [ABSTRACT FROM AUTHOR]

CONFERENCES & conventions, ANTIVIRAL agents, CAREER development, VACCINE development, SCIENTIFIC community, and INFORMATION sharing

The 35th International Conference on Antiviral Research (ICAR), sponsored by the International Society for Antiviral Research (ISAR), was held in Seattle, Washington, USA, on March 21–25, 2022 and concurrently through an interactive remote meeting platform. This report gives an overview of the conference on behalf of the society. It provides a general review of the meeting and awardees, summarizing the presentations and their main conclusions from the perspective of researchers active in many different areas of antiviral research and development. Through ICAR, leaders in the field of antiviral research were able to showcase their efforts, as participants learned about key advances in the field. The impact of these efforts was exemplified by many presentations on SARS-CoV-2 demonstrating the remarkable response to the ongoing pandemic, as well as future pandemic preparedness, by members of the antiviral research community. As we address ongoing outbreaks and seek to mitigate those in the future, this meeting continues to support outstanding opportunities for the exchange of knowledge and expertise while fostering cross-disciplinary collaborations in therapeutic and vaccine development. The 36th ICAR will be held in Lyon, France, March 13–17, 2023. • This report summarizes presentations at the 35th International Conference on Antiviral Research. • This meeting used a hybrid model with in-person sessions in Seattle, WA, USA, and concurrent live virtual sessions. • Meeting sessions covered the treatment of a wide variety of viruses, pandemic preparedness, and other topics. • Plenary lectures focused on the role of foundations in antiviral development, pandemic preparedness and other key concepts. • The meeting also featured special sessions and events, late-breaking oral presentations, and a career development workshop. [ABSTRACT FROM AUTHOR]

HETEROGENEOUS catalysts, UNSATURATED compounds, DECOMPOSITION method, ETHANOL, AROMATIC aldehydes, CALCITE, and OXINDOLES

[Display omitted] • CaCO 3 nanoflowers (NFs) were synthesized by the thermal decomposition method. • Knoevenagel condensation of 2-oxindole has been investigated using Calcite NFs first time. • The higher catalytic activity of NFs is due to the size, surface area, and hollow, sheet-like structures of flower petals. • According to the findings, the technique is far more cost-effective and has a lower environmental toxicity impact. • The catalyst could be recycled without significantly decreasing reactivity until five cycles. α-β unsaturated heterocyclic compounds such as C3-arylidene-oxindoles, with five-member rings containing nitrogen, have an important role in the realm of medicine. This study aims to synthesize the C3-arylindene-oxindoles derivative compounds using calcite nanoflowers (CaCO 3 NFs) as a heterogeneous catalyst for the first time. These CaCO 3 NFs prepared by the thermal decomposition method, which is an active and reusable catalyst for stereospecific Knoevenagel condensation reaction between 2-oxindole and aromatic aldehyde under different solvent conditions like water, ethyl alcohol, and 50 % aqueous ethyl alcohol. This catalytic method is employed with a wide range of aromatic aldehydes to produce high yields of C3-arylidene-oxindoles (93–99 %), with stereo-specifically E -isomers (100 %) for 50 % alcohol and alcohol as a solvent. [ABSTRACT FROM AUTHOR]

Glioblastoma multiforme (GBM) is a highly‐aggressive, dreadful disease with poor prognosis and disappointing clinical success. There is an unmet medical need of molecularly‐targeted therapeutics for GBM treatment. In the present work, a series of novel 2‐phenyl‐substituted 4‐amino–6,7‐dihydro‐5H‐cyclopenta[d]pyrimidines was designed, synthesized, purified, characterized, and evaluated for cytotoxicity against glioblastoma cell line U87‐MG. The design process (virtual library enumeration around the core, physicochemical and molecular property prediction/calculation of the designs, filtering the undesirable ones, and the diversity analyses of the lead‐like designs), was carefully curated so as to obtain a set of structurally‐diverse, novel molecules (total 20), with a particular focus on the relatively unexplored core structure, 6,7‐dihydro‐5H‐cyclopenta[d]pyrimidine. The preliminary screening was done using MTT assay at 10 and 100 μM concentrations of the title compounds F1−F20 and positive control cisplatin, which yielded six hits (% inhibition at 10 μM: ~50%)—F2, F3, F5, F7, F15, and F20, which were taken up for IC50 determination. The top hits F2 and F7 (IC50 < 10 μM) were further used for computational studies such as target prediction, followed by their molecular docking in the binding sites of the top‐3 predicted targets (epidermal growth factor receptor kinase domain, cyclin‐dependent kinase 2 [CDK2]) /cyclin E, and anaplastic lymphoma kinase [ALK]). The docking pose analyses revealed interesting trends. The relatively planar core structure, presence of favorable hinge‐binding substructures, basic groups, all added up, and culminated in appreciable cytotoxicity against GBM cell line. [ABSTRACT FROM AUTHOR]

SMALL molecules, STYRENE, ALKENES, FATTY acids, and ALCOHOL

Enantioselective synthesis of chiral alcohols through asymmetric addition of water across an unactivated alkene is a highly sought‐after transformation and a big challenge in catalysis. Herein we report the identification and directed evolution of a fatty acid hydratase from Marinitoga hydrogenitolerans for the highly enantioselective hydration of styrenes to yield chiral 1‐arylethanols. While directed evolution for styrene hydration was performed in the presence of heptanoic acid to mimic fatty acid binding, the engineered enzyme displayed remarkable asymmetric styrene hydration activity in the absence of the small molecule activator. The evolved styrene hydratase provided access to chiral alcohols from simple alkenes and water with high enantioselectivity (>99 : 1 e.r.) and could be applied on a preparative scale. [ABSTRACT FROM AUTHOR]

ENZYME stability, THERAPEUTIC immobilization, AMINOTRANSFERASES, KINETIC resolution, BIOCATALYSIS, ENZYMES, and AMINE oxidase

Biocatalytic syntheses often require unfavorable conditions, which can adversely affect enzyme stability. Consequently, improving the stability of biocatalysts is needed, and this is often achieved by immobilization. In this study, we aimed to compare the stability of soluble and immobilized transaminases from different species. A cysteine in a consensus sequence was converted to a single aldehyde by the formylglycine-generating enzyme for directed single-point attachment to amine beads. This immobilization was compared to cross-linked enzyme aggregates (CLEAs) and multipoint attachments to glutaraldehyde-functionalized amine- and epoxy-beads. Subsequently, the reactivity and stability (i.e., thermal, storage, and solvent stability) of all soluble and immobilized transaminases were analyzed and compared under different conditions. The effect of immobilization was highly dependent on the type of enzyme, the immobilization strategy, and the application itself, with no superior immobilization technique identified. Immobilization of HAGA-beads often resulted in the highest activities of up to 62 U/g beads, and amine beads were best for the hexameric transaminase from Luminiphilus syltensis. Furthermore, the immobilization of transaminases enabled its reusability for at least 10 cycles, while maintaining full or high activity. Upscaled kinetic resolutions (partially performed in a SpinChemTM reactor) resulted in a high conversion, maintained enantioselectivity, and high product yields, demonstrating their applicability. [ABSTRACT FROM AUTHOR]

ORAL drug administration, NANOSTRUCTURED materials, MAGNETIC nanoparticles, TRANSMISSION electron microscopy, NANOPARTICLE toxicity, RIETVELD refinement, and TRANSCRANIAL magnetic stimulation

Assessing the biocompatibility of magnetic nanoparticles for biomedical applications is highly demanded and attracted an increasing interest in the last years. We, herein report the synthesis, physical characterization, and biocompatibility of CoFe (2-x-y-z) Gd x Sm y Ho z O 4 (x = y = z = 0, 0.01) nanoparticles (NPs) synthesized by the auto-combustion method for the first time. The physicochemical and magnetic properties of the synthesized nanoparticles were fully characterized using various techniques including X-ray diffraction (XRD), Fourier transforms infrared spectra (FTIR), scanning electron microscopy (SEM), Transmission electron microscopy (TEM), and vibrating sample magnetometer (VSM). A single-phase with a space group Fd-3m and mixed spinel structure were confirmed by XRD, Rietveld analysis, and the cation distribution study. FTIR confirms the formation of the crystallographic sites of the spinel structure, namely the octahedral site and the tetrahedral site. The nanoparticles exhibited a quasi-spherical shape with size distribution (24–51 nm). VSM measurements reveal that magnetic properties can be tuned by doping for biomedical applications. To evaluate the safety of our nanoparticle sub-chronic toxicity was highlighted in Wistar rats by oral administration at doses of 500, 250,125, and 50 mg/kg and by intraperitoneal injection at doses of 40,20,10, and 5 mg/kg. Results showed no significant changes in the hematological parameters, serum biochemical system, organ weight, and histopathological examination (p > 0,05) for doses below 250 mg/kg and 40 mg/kg administered orally or by intraperitoneal injection respectively. The results of the current study suggesting that treatment with the nanoparticle for 28 days does not produce any significant toxicity in the male and female rats for the either using voices (oral, intraperitoneal) except at high doses. These findings reported here strongly suggest that the as-prepared nanoparticles can be used in several biomedical applications, including separation and purification, drug delivery, imaging (MRI contrast), and therapy (hyperthermia). [ABSTRACT FROM AUTHOR]

HYDROGELS, ELASTICITY, INCLUSION compounds, CHEMICAL structure, POLYMER networks, DOUBLE bonds, MACROMONOMERS, and POLYACRYLAMIDE

Smart hydrogels are interesting materials as they can change their dimensions upon an external trigger. Herein, a photoresponsive double cross‐linked hydrogel system based on polyacrylamide (AAm) with grafted poly(2‐methyl‐2‐oxazoline) (PMOXA) chains with a α‐cyclodextrin/azobenzene host–guest complex is present. Switching azobenzene from the trans to the cis‐conformation through irradiation with UV light breaks the complex reversibly. Well‐defined PMOXA macromonomers have been synthesized and functionalized with the respective host and guest functionalities as well as double bonds for the incorporation into the polymer network as grafted side chains. The chemical structure of the macromonomers and the complex is confirmed by 1H NMR, 2D NOESY NMR, GPC, and UV–VIS measurements. Hydrogels with different ratios of permanent and photoresponsive cross‐linkers as well as different chain lengths of the PMOXA macromonomers are analyzed toward differences in their swelling/deswelling and elastic properties. Successive irradiation of supramolecular hydrogels with UV and VIS light allowed for a repeated swelling and de‐swelling of the hydrogels. This system is studied at both macro and micro scales, showing similar swelling tendencies. The tuned properties of photoresponsive double cross‐linked hydrogel makes this system a promising tool for various applications, for example, as in situ controllable valves in microfluidic flow cells. [ABSTRACT FROM AUTHOR]

BRONSTED acids, PHOSPHORIC acid, PHASE-transfer catalysis, COVALENT bonds, QUINOLINE, ACIDS, FLUORINATION, and CATALYSIS

The linking of phosphoric acids via covalent or mechanical bonds has proven to be a successful strategy for the design of novel organocatalysts. Here, we present the first systematic investigation of singly‐linked and macrocyclic bisphosphoric acids, including their synthesis and their application in phase‐transfer and Brønsted acid catalysis. We found that the novel bisphosphoric acids show dramatically increased enantioselectivities in comparison to their monophosphoric acid analogues. However, the nature, length and number of linkers has a profound influence on the enantioselectivities. In the asymmetric dearomative fluorination via phase‐transfer catalysis, bisphosphoric acids with a single, rigid bisalkyne‐linker give the best results with moderate to good enantiomeric excesses. In contrast, bisphosphoric acids with flexible linkers give excellent enantioselectivities in the transfer‐hydrogenation of quinolines via cooperative Brønsted acid catalysis. In the latter case, sufficiently long linkers are needed for high stereoselectivities, as found experimentally and supported by DFT calculations. [ABSTRACT FROM AUTHOR]

POLYMERIZATION, RENEWABLE natural resources, MONOMERS, DEPOLYMERIZATION, PETROLEUM, LIGNINS, and AMMONIA

The complete utilization of all lignin depolymerization streams obtained from the reductive catalytic fractionation (RCF) of woody biomass into high-value-added compounds is a timely and challenging objective. Here, we present a catalytic methodology to transform beech lignin-derived dimers and oligomers (DO) into well-defined 1,4-cyclohexanediol and 1,4-cyclohexanediamine. The latter two compounds have vast industrial relevance as monomers for polymer synthesis as well as pharmaceutical building blocks. The proposed two-step catalytic sequence involves the use of the commercially available RANEY® Ni catalyst. Therefore, the first step involves the efficient defunctionalization of lignin-derived 2,6-dimethoxybenzoquinone (DMBQ) into 1,4-cyclohexanediol (14CHDO) in 86.5% molar yield, representing a 10.7 wt% yield calculated on a DO weight basis. The second step concerns the highly selective amination of 1,4-cyclohexanediol with ammonia to give 1,4-cyclohexanediamine (14CHDA) in near quantitative yield. The ability to use RANEY® Ni and ammonia in this process holds great potential for future industrial synthesis of 1,4-cyclohexanediamine from renewable resources. [ABSTRACT FROM AUTHOR]

SULFUR compounds, SOLIDS, DIPYRRINS, SULFUR, COMPUTATIONAL chemistry, and ETHERS

In this contribution, we describe a set of three chlorinated bridged ethers with varying numbers of sulfur and oxygen atoms. The substitution leads to highly emissive compounds with tunable photophysical properties in relationship to their state of aggregation, i. e. in solution, as aggregates and in the solid state. Additionally, an in‐depth X‐ray diffractometric analysis supported by a Hirshfeld study of non‐covalent interactions and quantum chemical simulations was carried out. As the outcome, it was found that the content of sulfur in the compounds regulates the tuning of emission in solution as well as in the aggregated states as a consequence of their variation of planarity. [ABSTRACT FROM AUTHOR]

ANTIFUNGAL agents, CHITIN, MOLECULAR docking, AMINES, TACROLIMUS, and ASPERGILLUS nidulans

Agents with antifungal activity play a vital role as therapeutics in health care, as do fungicides in agriculture. Effectiveness, toxicological profile, and eco-friendliness are among the properties used to select suitable substances. Furthermore, a steady supply of new agents with different modes of action is required to counter the well-known potential of human and phyto-pathogenic fungi to develop resistance against established antifungals. Here, we use an in vitro growth assay to investigate the activity of the calcineurin inhibitor tacrolimus in combination with the commercial fungicides cyproconazole and hymexazol, as well as with two earlier reported novel {2-(3-R-1H-1,2,4-triazol-5-yl)phenyl}amines, against the fungi Aspergillus niger, Colletotrichum higginsianum, Fusarium oxysporum and the oomycete Phytophthora infestans, which are notoriously harmful in agriculture. When tacrolimus was added in a concentration range from 0.25 to 25 mg/L to the tested antifungals (at a fixed concentration of 25 or 50 mg/L), the inhibitory activities were distinctly enhanced. Molecular docking calculations revealed triazole derivative 5, (2-(3-adamantan-1-yl)-1H-1,2,4-triazol-5-yl)-4-chloroaniline), as a potent inhibitor of chitin deacetylases (CDA) of Aspergillus nidulans and A. niger (AnCDA and AngCDA, respectively), which was stronger than the previously reported polyoxorin D, J075-4187, and chitotriose. The results are discussed in the context of potential synergism and molecular mode of action. [ABSTRACT FROM AUTHOR]

ACID derivatives, ELLAGIC acid, COLUMN chromatography, METABOLITES, ANTI-infective agents, ETHYL acetate, and FLAVONOIDS

Medicinal plants are known as sources of potential antimicrobial compounds belonging to different classes. The aim of the present work was to evaluate the antimicrobial potential of the crude extract, fractions, and some isolated secondary metabolites from the leaves of Macaranga occidentalis, a Cameroonian medicinal plant traditionally used for the treatment of microbial infections. Repeated column chromatography of the ethyl acetate and n-butanol fractions led to the isolation of seventeen previously known compounds (1−17), among which three steroids (1−3), one triterpene (4), four flavonoids (5−8), two stilbenoids (9 and 10) four ellagic acid derivatives (11−14), one geraniinic acid derivative (15), one coumarine (16), and one glyceride (17). Their structures were elucidated mainly by means of extensive spectroscopic and spectrometric (1D and 2D NMR and, MS) analysis and comparison with the published data. The crude extract, fractions, and isolated compounds were all screened for their antimicrobial activity. None of the natural compounds was active against Candida strains. However, the crude extract, fractions, and compounds showed varying levels of antibacterial properties against at least one of the tested bacterial strains, with minimal inhibitory concentrations (MICs) ranging from 250 to 1000 μg/mL. The n-butanol (n-BuOH) fraction was the most active against Escherichia coli ATCC 25922, with an MIC value of 250 μg/mL. Among the isolated compounds, schweinfurthin B (10) exhibited the best activity against Staphylococcus aureus NR 46003 with a MIC value of 62.5 μg/mL. In addition, schweinfurthin O (9) and isomacarangin (6) also exhibited moderate activity against the same strain with a MIC value of 125 μg/mL. Therefore, pharmacomodulation was performed on compound 6 and three new semisynthetic derivatives (6a–c) were prepared by allylation and acetylation reactions and screened for their in vitro antimicrobial activity. None of the semisynthetic derivatives showed antimicrobial activity against the same tested strains. The chemophenetic significance of the isolated compounds is also discussed in this paper. [ABSTRACT FROM AUTHOR]

Abstract An ultrasound-assisted simple, easy and straightforward method for the synthesis of α-aminophosphonates has been developed via Kornblum/Kabachnik-fields reaction. The method involves in situ generation of an aldehyde intermediate from benzyl halides via oxidative dehalogenation followed by coupling with aryl amine and trialkyl phosphite in a one-pot three component manner under ultrasonic irradiations. The developed method is compatible with various functionalities and the desired products are obtained in good to excellent yield under mild conditions. [ABSTRACT FROM AUTHOR]

PROSOPIS juliflora, LEGUMES, INDOLE alkaloids, ETHYL acetate, NATURAL products, FLAVONOIDS, ANTIBACTERIAL agents, and GLYCERIN

The chemical investigation of ethyl acetate extracts of the roots and stem bark of Prosopis juliflora Swartz D.C (Fabaceae) led to the isolation of a new flavonoid, prosojuliflavone (1) and a new natural indole alkaloid dimer, N,N-Bis(2-(1H-indol-3-yl) ethyl) oxalamide (2) along with eight known compounds including three flavonoids, vitexin (3), a mixture of vitexin (3) and isovitexin (4), 4ʹ- O -methyl- ent -gallocathechin (5), two indole alkaloids, N-acetyltryptamine (6), tryptamine (7) , a disaccharide, sucrose (8), two monoglycerides, hyloglyceride (9) and 1-(26-hydroxyhexacosanoyl)-glycerol (10). Their structures were elucidated by means of spectroscopic and spectrometric data, as well as by comparison with literature data. Compound 2 is described here for the first time as a natural product with complete 1H and 13C assignments. The antibacterial and antioxidant activities of the extracts and isolated compounds were evaluated. Compounds 1 and 5 (MIC = 8–64 μg/ml) were samples with most antibacterial activities while compound 1 (EC 50 = 4.31 μg/mL; GEAC = 94.66 μg/mL) displayed the largest antioxidant activity. Interestingly, the tested samples showed bactericidal effects (MBC/MIC ≤4) with respect to sensitive bacteria. Compounds 1 , 2 , 6 , 8 and 10 were isolated for the first time from the Fabaceae family. The chemotaxonomic significance of these compounds was also discussed. The overall results highlight the potential of P. juliflora as a sustainable source of antibacterial and antioxidant agents. [Display omitted] • A new C-glycosylflavone, prosojuliflavone (1) was isolated from Prosopis juliflora. • N,N-Bis(2-(1H-indol-3-yl)ethyl)oxalamide (2) was isolated as natural product. • 1 displayed the largest antioxidant activity (EC 50 = 4.31 μg/mL, GEAC = 94.66 μg/mL). • Compounds 1 , 2 , 5, 6, and 8 – 10 were isolated from P. juliflora for the first time. • Chemotaxonomic significance of the isolates was discussed. [ABSTRACT FROM AUTHOR]

NICOTINIC acetylcholine receptors, NICOTINIC receptors, LIGAND-gated ion channels, CHOLINERGIC receptors, LIGANDS, CONOTOXINS, PROTEIN-ligand interactions, ALZHEIMER'S disease, and DRUG design

The neuronal nicotinic acetylcholine receptors (nAChRs) belong to the ligand-gated ion channel (GLIC) group, presenting a crucial role in several biological processes and neuronal disorders. The α4β2 and α7 nAChRs are the most abundant in the central nervous system (CNS), being involved in challenging diseases such as epilepsy, Alzheimer's disease, schizophrenia, and anxiety disorder, as well as alcohol and nicotine dependencies. In addition, in silico-based strategies may contribute to revealing new insights into drug design and virtual screening to find new drug candidates to treat CNS disorders. In this context, the pharmacophore maps were constructed and validated for the orthosteric sites of α4β2 and α7 nAChRs, through a docking-based Comparative Intermolecular Contacts Analysis (dbCICA). In this sense, bioactive ligands were retrieved from the literature for each receptor. A molecular docking protocol was developed for all ligands in both receptors by using GOLD software, considering GoldScore, ChemScore, ASP, and ChemPLP scoring functions. Output GOLD results were post-processed through dbCICA to identify critical contacts involved in protein-ligand interactions. Moreover, Crossminer software was used to construct a pharmacophoric map based on the most well-behaved ligands and negative contacts from the dbCICA model for each receptor. Both pharmacophore maps were validated by using a ROC curve. The results revealed important features for the ligands, such as the presence of hydrophobic regions, a planar ring, and hydrogen bond donor and acceptor atoms for α4β2. Parallelly, a non-planar ring region was identified for α7. These results can enable fragment-based drug design (FBDD) strategies, such as fragment growing, linking, and merging, allowing an increase in the activity of known fragments. Thus, our results can contribute to a further understanding of structural subunits presenting the potential for key ligand-receptor interactions, favoring the search in molecular databases and the design of novel ligands. [ABSTRACT FROM AUTHOR]

SUSTAINABILITY, COVID-19 pandemic, SUSTAINABLE chemistry, UNDERGRADUATES, PHYSICAL constants, and CHEMICAL laboratories

In this section of Resonance, we invite readers to pose questions likely to be raised in a classroom situation. We may suggest strategies for dealing with them, or invite responses, or both. "Classroom" is equally a forum for raising broader issues and sharing personal experiences and viewpoints on matters related to teaching and learning science. Amidst the Covid-19 pandemic, we have planned a strategy for our institution which aims towards reuse and reduce principles of Green Chemistry. Organic preparations in the undergraduate curriculum can be utilized for other sister laboratory experiments such as recrystallization, determination of physical constants (m.pt) and detection of extra elements, detection of functional group and in qualitative analysis. The product of preparation can also be subjected to a second synthesis. This approach will reduce the amount of chemicals needed for carrying out experiments other than organic preparations. This paper illustrates a few organic preparations which can be reused for other companion laboratory exercises. This approach may set a model towards sustainability for other undergraduate laboratories. [ABSTRACT FROM AUTHOR]