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Protein supersecondary structures / edited by Alexander E. Kister.



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Publication date:
New York : Humana Press, c2013.
  • Book
  • xvii, 320 p. : ill. (some col.) ; 26 cm.
Includes bibliographical references and index.
  • Super-secondary structure: a historical perspective. Pt. I. Representation of supersecondary structure
  • Hierarchical representation of supersecondary structures using a graph-theoretical approach / Ina Koch, Annika Kreuchwig, and Patrick May
  • Up, down and around: identifying recurrent interactions within and between super-secondary structures in -propellers / Søren Thirup, Vikas Gupta, and Esben M. Quistgaard
  • Structure description and identi fi cation using the tableau representation of protein folding patterns / Arun S. Konagurthu and Arthur M. Lesk
  • Pt. II. Supersecondary structure prediction
  • Computational prediction of secondary and supersecondary structures / Ke Chen and Lukasz Kurgan
  • A survey of machine learning methods for secondary and supersecondary protein structure prediction / Hui Kian Ho, Lei Zhang, Kotagiri Ramamohanarao, and Shawn Martin
  • Beyond supersecondary structure: the global properties of protein sequences / S. Rackovsky
  • Creating supersecondary structures with buildbeta / Silvia Crivelli and Nelson Max
  • A modular perspective of protein structures: application to fragment based loop modeling / Narcis Fernandez-Fuentes and Andras Fiser
  • Residue-residue contacts: application to analysis of secondary structure interactions
  • Pt. III. supersecondary structure and protein folding
  • Super-secondary structures and modeling of protein folds / Alexander V. Efimov
  • Computational simulations of protein folding to engineer amino acid sequences to encourage desired supersecondary structure formation / Bernard S. Gerstman and Prem P. Chapagain
  • Protein folding at atomic resolution: analysis of autonomously folding supersecondary structure motifs by nuclear magnetic resonance / Lorenzo Sborgi, Abhinav Verma, Mourad Sadqi, Eva de Alba, and Victor Muñoz
  • Artificial supersecondary structures based on aromatic oligoamides / Hai-Yu Hu and Chuan-Feng Chen
  • Pt. IV. Other applications of supersecondary structure to protein biology
  • Cross-β-sheet supersecondary structure in amyloid folds: techniques for detection and characterization / Raimon Sabaté and Salvador Ventura
  • Analyzing oligomerization of individual transmembrane helices and of entire membrane proteins in e. coli: a hitchhiker´s guide to GALLEX / Florian Cymer, Charles R. Sanders, and Dirk Schneider
  • Supersecondary structure prediction of transmembrane beta-barrel proteins / Van Du T Tran, Philippe Chassignet, and Jean-Marc Steyaert
  • Functional structural motifs for protein–ligand, protein-protein and protein–nucleic acid interactions and their connection to supersecondary structures / Akira R. Kinjo and Haruki Nakamura.
Kister, Alexander E.
Methods in molecular biology, 1064-3745 ; 932
Springer protocols, 1949-2448
Methods in molecular biology (Clifton, N.J.) v. 932.
Springer protocols (Series)

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