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Data mining for systems biology : methods and protocols / edited by Hiroshi Mamitsuka, Charles DeLisi, Minoru Kanehisa.



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Publication date:
New York : Humana Press : Springer, c2013.
  • Book
  • xii, 279 p. : ill. (some col.) ; 26 cm.
Includes bibliographical references and index.
  • Dense module enumeration in biological networks / Koji Tsuda and Elisabeth Georgii
  • Discovering interacting domains and motifs in protein-protein interactions / Willy Hugo, Wing-Kin Sung, and See-Kiong Ng
  • Global alignment of protein-protein interaction networks / Misael Mongiov─▒ and Roded Sharan
  • Structure learning for Bayesian networks as models of biological networks / Antti Larjo, Ilya Shmulevich, and Harri Lahdesmaki
  • Supervised inference of gene regulatory networks from positive and unlabeled examples / Fantine Mordelet and Jean-Philippe Vert
  • Mining regulatory network connections by ranking transcription factor target genes using time series expression data / Antti Honkela, Magnus Rattray, and Neil D. Lawrence
  • Identifying pathways of coordinated gene expression / Timothy Hancock, Ichigaku Takigawa, and Hiroshi Mamitsuka
  • Mining frequent subtrees in glycan data using the rings glycan miner tool / Kiyoko Flora Aoki-Kinoshita
  • Chemogenomic approaches to infer drug-target interaction networks / Yoshihiro Yamanishi
  • Localization prediction and structure-based in silico analysis of bacterial proteins : with emphasis on outer membrane proteins / Kenichiro Imai ... [et al.]
  • Analysis strategy of protein-protein interaction networks / Zhenjun Hu
  • Data mining in the metacyc family of pathway databases / Peter D. Karp, Suzanne Paley, and Tomer Altman
  • Gene set/pathway enrichment analysis / Jui-Hung Hung
  • Construction of functional linkage gene networks by data integration / Bolan Linghu, Eric A. Franzosa, and Yu Xia
  • Genome-wide association studies / Tun-Hsiang Yang, Mark Kon, and Charles DeLisi
  • Viral genome analysis and knowledge management / Carla Kuiken ... [et al.]
  • Molecular network analysis of diseases and drugs in KEGG / Minoru Kanehisa.
Mamitsuka, Hiroshi.
DeLisi, Charles, 1941-
Kanehisa, Minoru.
Methods in molecular biology, 1064-3745 ; 939
Springer protocols
Methods in molecular biology (Clifton, N.J.) ; v. 939.
Springer protocols (Series)

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